A review on linear encoding methods and geometry based methods for protein structure alignment

Samira Fotoohifiroozabadi, Safaai Deris, Mohd Saberi Mohamad, Jafar Razmara

Research output: Contribution to journalArticlepeer-review

Abstract

In this work the linear encoding methods and geometry based methods and their applications in protein structure comparison analysis are presented and compared based on their time complexity and accuracy. The comparison results shows that linear encoding methods obtains higher running speed but with lower accuracy, while geometric based methods are much more accurate, but with slower speed.

Original languageEnglish
Pages (from-to)202-206
Number of pages5
JournalLife Science Journal
Volume11
Issue numberSPEC. ISSUE 3
Publication statusPublished - 2014
Externally publishedYes

Keywords

  • Geometry based methods
  • Linear encoding methods
  • Protein structure

ASJC Scopus subject areas

  • General Biochemistry,Genetics and Molecular Biology

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