A review on linear encoding methods and geometry based methods for protein structure alignment

Samira Fotoohifiroozabadi; Safaai Deris; Mohd Saberi Mohamad; Jafar Razmara

A review on linear encoding methods and geometry based methods for protein structure alignment

Samira Fotoohifiroozabadi, Safaai Deris, Mohd Saberi Mohamad, Jafar Razmara

Research output: Contribution to journal › Article › peer-review

Abstract

In this work the linear encoding methods and geometry based methods and their applications in protein structure comparison analysis are presented and compared based on their time complexity and accuracy. The comparison results shows that linear encoding methods obtains higher running speed but with lower accuracy, while geometric based methods are much more accurate, but with slower speed.

Original language	English
Pages (from-to)	202-206
Number of pages	5
Journal	Life Science Journal
Volume	11
Issue number	SPEC. ISSUE 3
Publication status	Published - 2014
Externally published	Yes

Keywords

Geometry based methods
Linear encoding methods
Protein structure

ASJC Scopus subject areas

General Biochemistry,Genetics and Molecular Biology

Cite this

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title = "A review on linear encoding methods and geometry based methods for protein structure alignment",

abstract = "In this work the linear encoding methods and geometry based methods and their applications in protein structure comparison analysis are presented and compared based on their time complexity and accuracy. The comparison results shows that linear encoding methods obtains higher running speed but with lower accuracy, while geometric based methods are much more accurate, but with slower speed.",

keywords = "Geometry based methods, Linear encoding methods, Protein structure",

author = "Samira Fotoohifiroozabadi and Safaai Deris and Mohamad, \{Mohd Saberi\} and Jafar Razmara",

year = "2014",

language = "English",

volume = "11",

pages = "202--206",

journal = "Life Science Journal",

issn = "1097-8135",

publisher = "Zhengzhou University",

number = "SPEC. ISSUE 3",

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T1 - A review on linear encoding methods and geometry based methods for protein structure alignment

AU - Fotoohifiroozabadi, Samira

AU - Deris, Safaai

AU - Mohamad, Mohd Saberi

AU - Razmara, Jafar

PY - 2014

Y1 - 2014

N2 - In this work the linear encoding methods and geometry based methods and their applications in protein structure comparison analysis are presented and compared based on their time complexity and accuracy. The comparison results shows that linear encoding methods obtains higher running speed but with lower accuracy, while geometric based methods are much more accurate, but with slower speed.

AB - In this work the linear encoding methods and geometry based methods and their applications in protein structure comparison analysis are presented and compared based on their time complexity and accuracy. The comparison results shows that linear encoding methods obtains higher running speed but with lower accuracy, while geometric based methods are much more accurate, but with slower speed.

KW - Geometry based methods

KW - Linear encoding methods

KW - Protein structure

UR - https://www.scopus.com/pages/publications/84897146665

UR - https://www.scopus.com/inward/citedby.url?scp=84897146665&partnerID=8YFLogxK

M3 - Article

AN - SCOPUS:84897146665

SN - 1097-8135

VL - 11

SP - 202

EP - 206

JO - Life Science Journal

JF - Life Science Journal

IS - SPEC. ISSUE 3

ER -

A review on linear encoding methods and geometry based methods for protein structure alignment

Abstract

Keywords

ASJC Scopus subject areas

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