TY - JOUR
T1 - Computational evaluation of abrogation of hbx‐bcl‐xl complex with high‐affinity carbon nanotubes (Fullerene) to halt the hepatitis b virus replication
AU - Khan, Abbas
AU - Ahsan, Omar
AU - Wei, Dong Qing
AU - Ansari, Jawad Khaliq
AU - Najmi, Muzammil Hasan
AU - Muhammad, Khalid
AU - Waheed, Yasir
N1 - Funding Information:
Funding: K.M.’s work is supported by United Arab Emirates University‐Start up grant#G00003347 and UAEU‐UPAR‐Grant#G00003458. Y.W., O.A. and J.K.A. acknowledge support from Foundation University Islamabad’s internal funding program by ORIC.
Funding Information:
K.M.?s work is supported by United Arab Emirates University?Start up grant#G00003347 and UAEU?UPAR?Grant#G00003458. Y.W., O.A. and J.K.A. acknowledge support from Foundation University Islamabad?s internal funding program by ORIC.
Publisher Copyright:
© 2021 by the authors. Licensee MDPI, Basel, Switzerland.
PY - 2021/11/1
Y1 - 2021/11/1
N2 - Hepatitis B virus (HBV) is the world’s most prevalent chronic viral infection. More than 350 million individuals are chronic carriers of the virus, with an estimated 2 billion infected persons. For instance, the role of HBx protein in attachment and infection is very obvious and consequently deemed as an important druggable target. Targeting the interface and discovering novel drugs greatly advanced the field of therapeutics development. Therefore, in the current study, HBx to Bcl-xL is abrogated on high‐affinity carbon nanotubes using computational structural biology tools. Our analysis revealed that among the total 62 carbon fullerenes, only 13 compounds exhibited inhibitory activity against HBx, which was further confirmed through IFD‐based rescoring. Structural dynamics investigation revealed stable binding, compactness, and hydrogen bonds reprogramming. Moreover, the binding free energy calculation results revealed that the top hits1‐4 possess the total binding energy of −54.36 kcal/mol (hit1), −50.81 kcal/mol (hit2), −47.09 kcal/mol (hit3), and −45.59 kcal/mol for hit4. In addition, the predicted KD values and bioactivity scores further validated the inhibitory potential of these top hits. The identified compounds need further in vitro and in vivo validation to aid the treatment process of HBV.
AB - Hepatitis B virus (HBV) is the world’s most prevalent chronic viral infection. More than 350 million individuals are chronic carriers of the virus, with an estimated 2 billion infected persons. For instance, the role of HBx protein in attachment and infection is very obvious and consequently deemed as an important druggable target. Targeting the interface and discovering novel drugs greatly advanced the field of therapeutics development. Therefore, in the current study, HBx to Bcl-xL is abrogated on high‐affinity carbon nanotubes using computational structural biology tools. Our analysis revealed that among the total 62 carbon fullerenes, only 13 compounds exhibited inhibitory activity against HBx, which was further confirmed through IFD‐based rescoring. Structural dynamics investigation revealed stable binding, compactness, and hydrogen bonds reprogramming. Moreover, the binding free energy calculation results revealed that the top hits1‐4 possess the total binding energy of −54.36 kcal/mol (hit1), −50.81 kcal/mol (hit2), −47.09 kcal/mol (hit3), and −45.59 kcal/mol for hit4. In addition, the predicted KD values and bioactivity scores further validated the inhibitory potential of these top hits. The identified compounds need further in vitro and in vivo validation to aid the treatment process of HBV.
KW - Carbon nanotubes
KW - Docking
KW - Free energy calculation
KW - HBV
KW - IFD
KW - Simulation
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U2 - 10.3390/molecules26216433
DO - 10.3390/molecules26216433
M3 - Article
C2 - 34770842
AN - SCOPUS:85117934092
SN - 1420-3049
VL - 26
JO - Molecules
JF - Molecules
IS - 21
M1 - 6433
ER -