TY - GEN
T1 - Continuous Dynamic Bayesian Network for gene regulatory network modelling
AU - Baba, Norhaini
AU - Mohamad, Mohd Saberi
AU - Mohamed Salleh, Abdul Hakim
AU - Ahmad Hijazi, Mohd Hanafi
AU - Chai, Lian En
AU - Zainuddin, Muhammad Mahfuz
AU - Deris, Safaai
N1 - Publisher Copyright:
© 2014 IEEE.
PY - 2014/2/18
Y1 - 2014/2/18
N2 - In order to understand the underlying function of organisms, it is necessary to study the behaviour of genes in a gene regulatory network context. Several computational approaches are available for modelling gene regulatory networks with different datasets. Hence, this research is conducted to model the gene regulatory gene network using the proposed computational approach which is the Dynamic Bayesian Network. Dynamic Bayesian Network (DBN) is extensively used to construct GRNs based on its ability to handle microarray data and modelling feedback loops (cyclic regulation). The DBN approach is then extended to the continuous Dynamic Bayesian Network (cDBN) to construct a gene regulatory network with continuous data without discretization. The performance of the constructed gene networks of Saccharomyces cerevisiae were evaluated and compared with the previous works. At the end of this research, the gene networks constructed for Saccharomy cescerevisiae discovered more potential interactions between genes. Therefore, it can be concluded that the performance of the gene regulatory networks constructed using continuous dynamic Bayesian networks in this research is proven to be better because it can reveal more gene relationships as well as allowing feedback loops or cyclic regulation.
AB - In order to understand the underlying function of organisms, it is necessary to study the behaviour of genes in a gene regulatory network context. Several computational approaches are available for modelling gene regulatory networks with different datasets. Hence, this research is conducted to model the gene regulatory gene network using the proposed computational approach which is the Dynamic Bayesian Network. Dynamic Bayesian Network (DBN) is extensively used to construct GRNs based on its ability to handle microarray data and modelling feedback loops (cyclic regulation). The DBN approach is then extended to the continuous Dynamic Bayesian Network (cDBN) to construct a gene regulatory network with continuous data without discretization. The performance of the constructed gene networks of Saccharomyces cerevisiae were evaluated and compared with the previous works. At the end of this research, the gene networks constructed for Saccharomy cescerevisiae discovered more potential interactions between genes. Therefore, it can be concluded that the performance of the gene regulatory networks constructed using continuous dynamic Bayesian networks in this research is proven to be better because it can reveal more gene relationships as well as allowing feedback loops or cyclic regulation.
KW - dynamic bayesian network
KW - gene expression data
KW - gene regulatory networks
UR - https://www.scopus.com/pages/publications/84988302680
UR - https://www.scopus.com/pages/publications/84988302680#tab=citedBy
U2 - 10.1109/ICCST.2014.7045200
DO - 10.1109/ICCST.2014.7045200
M3 - Conference contribution
AN - SCOPUS:84988302680
T3 - 2014 International Conference on Computational Science and Technology, ICCST 2014
BT - 2014 International Conference on Computational Science and Technology, ICCST 2014
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 2014 International Conference on Computational Science and Technology, ICCST 2014
Y2 - 27 August 2014 through 28 August 2014
ER -