Denaturation studies reveal significant differences between GFP and blue fluorescent protein

Ibtesam A. Saeed, S. Salman Ashraf

Research output: Contribution to journalArticlepeer-review

30 Citations (Scopus)


Green fluorescent protein (GFP) is an unusually stable fluorescent protein that belongs to a family of related auto-fluorescent proteins (AFPs). These AFPs have been generated from jellyfish GFP by mutating the amino acids in the chromophore or its vicinity. Variants that emit light in the blue region (Blue Fluorescent Protein, BFP), red region, or yellow region are readily available and are widely used in diverse applications. Previously, we had used fluorescence spectroscopy to study the effect of pH on the denaturation of GFP with SDS, urea, and heat. Surprisingly, we found that SDS, urea or heat, did not have any significant effect on the fluorescence of GFP at pH 7.5 or 8.5, however, at pH 6.5, the protein lost all fluorescence within a very short period of time. These results suggested that GFP undergoes a structural/stability shift between pH 6.5 and 7.5, with the GFP structure at pH 6.5 being very sensitive to denaturation by SDS, urea, and heat. In the present study, we wanted to explore whether the stability or structure of the closely related BFP is also pH dependent. As expected, we found heat-induced denaturation and renaturation of BFP to be pH dependent, very much like GFP. However, when exposed to other denaturants like urea/heat or SDS we found BFP to behave very differently than GFP. Unlike GFP, which at pH 8.5 and 7.5 is very resistant to SDS-induced denaturation, BFP readily lost about 20% of its fluorescence at pH 8.5 and about 60% fluorescence at pH 7.5. Also, our denaturation and renaturation studies show that under certain conditions, BFP is more stable than GFP, such that under conditions where GFP is completely denatured, BFP still retained significant fluorescence. Taken together, our preliminary results show that despite being very similar in both amino acid sequences and overall structures, there may be subtle and important structural/conformational differences between BFP and GFP.

Original languageEnglish
Pages (from-to)236-241
Number of pages6
JournalInternational Journal of Biological Macromolecules
Issue number3
Publication statusPublished - Oct 1 2009


  • AFP
  • Auto-fluorescent protein
  • BFP
  • Blue fluorescent protein
  • Fluorescence
  • GFP
  • Green fluorescent protein
  • Molten globule
  • SDS
  • Thermal denaturation
  • Urea
  • pH dependence

ASJC Scopus subject areas

  • Structural Biology
  • Biochemistry
  • Molecular Biology
  • Economics and Econometrics
  • General Energy


Dive into the research topics of 'Denaturation studies reveal significant differences between GFP and blue fluorescent protein'. Together they form a unique fingerprint.

Cite this