GOBASE – A database of mitochondrial and chloroplast information

Emmet A. O’ Brien; Elarbi Badidi; Ania Barbasiewicz; Cristina deSousa; B. Franz Lang; Gertraud Burger

doi:10.1093/nar/gkg090

GOBASE – A database of mitochondrial and chloroplast information

Emmet A. O’ Brien
, Elarbi Badidi
, Ania Barbasiewicz
, Cristina deSousa
, B. Franz Lang
, Gertraud Burger

Research output: Contribution to journal › Review article › peer-review

22 Citations (Scopus)

Abstract

GOBASE is a relational database containing integrated sequence, RNA secondary structure and biochemical and taxonomic information about organelles. GOBASE release 6 (summer 2002) contains over 130 000 mitochondrial sequences, an increase of 37% over the previous release, and more than 30 000 chloroplast sequences in a new auxiliary database. To handle this flood of new data, we have designed and implemented GOpop, a Java system for population and verification of the database. We have also implemented a more powerful and flexible user interface using the PHP programming language. http://megasun.bch.umontreal.ca/gobase/ gobase.html.

Original language	English
Pages (from-to)	176-178
Number of pages	3
Journal	Nucleic acids research
Volume	31
Issue number	1
DOIs	https://doi.org/10.1093/nar/gkg090
Publication status	Published - Jan 1 2003
Externally published	Yes

ASJC Scopus subject areas

Genetics

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10.1093/nar/gkg090

Cite this

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title = "GOBASE – A database of mitochondrial and chloroplast information",

abstract = "GOBASE is a relational database containing integrated sequence, RNA secondary structure and biochemical and taxonomic information about organelles. GOBASE release 6 (summer 2002) contains over 130 000 mitochondrial sequences, an increase of 37\% over the previous release, and more than 30 000 chloroplast sequences in a new auxiliary database. To handle this flood of new data, we have designed and implemented GOpop, a Java system for population and verification of the database. We have also implemented a more powerful and flexible user interface using the PHP programming language. http://megasun.bch.umontreal.ca/gobase/ gobase.html.",

author = "\{O{\textquoteright} Brien\}, \{Emmet A.\} and Elarbi Badidi and Ania Barbasiewicz and Cristina deSousa and Lang, \{B. Franz\} and Gertraud Burger",

note = "Funding Information: We wish to thank Alex Nip for his contribution to the technological framework of the database, Mathieu Coudert and Bruno Duclouet for development of the GOdigger PHP interface, Liusong Yang and Lin Liu for programming support in PHP and Java, and Allan Sun for system administration. This project was funded by grant GOP-15331 from the Canadian Institutes for Health Research. Salary and interaction support from the Canadian Institute for Advanced Research to G.B. and B.F.L. is gratefully acknowledged.",

year = "2003",

month = jan,

day = "1",

doi = "10.1093/nar/gkg090",

language = "English",

volume = "31",

pages = "176--178",

journal = "Nucleic acids research",

issn = "0305-1048",

publisher = "Oxford University Press",

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T1 - GOBASE – A database of mitochondrial and chloroplast information

AU - O’ Brien, Emmet A.

AU - Badidi, Elarbi

AU - Barbasiewicz, Ania

AU - deSousa, Cristina

AU - Lang, B. Franz

AU - Burger, Gertraud

N1 - Funding Information: We wish to thank Alex Nip for his contribution to the technological framework of the database, Mathieu Coudert and Bruno Duclouet for development of the GOdigger PHP interface, Liusong Yang and Lin Liu for programming support in PHP and Java, and Allan Sun for system administration. This project was funded by grant GOP-15331 from the Canadian Institutes for Health Research. Salary and interaction support from the Canadian Institute for Advanced Research to G.B. and B.F.L. is gratefully acknowledged.

PY - 2003/1/1

Y1 - 2003/1/1

N2 - GOBASE is a relational database containing integrated sequence, RNA secondary structure and biochemical and taxonomic information about organelles. GOBASE release 6 (summer 2002) contains over 130 000 mitochondrial sequences, an increase of 37% over the previous release, and more than 30 000 chloroplast sequences in a new auxiliary database. To handle this flood of new data, we have designed and implemented GOpop, a Java system for population and verification of the database. We have also implemented a more powerful and flexible user interface using the PHP programming language. http://megasun.bch.umontreal.ca/gobase/ gobase.html.

AB - GOBASE is a relational database containing integrated sequence, RNA secondary structure and biochemical and taxonomic information about organelles. GOBASE release 6 (summer 2002) contains over 130 000 mitochondrial sequences, an increase of 37% over the previous release, and more than 30 000 chloroplast sequences in a new auxiliary database. To handle this flood of new data, we have designed and implemented GOpop, a Java system for population and verification of the database. We have also implemented a more powerful and flexible user interface using the PHP programming language. http://megasun.bch.umontreal.ca/gobase/ gobase.html.

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U2 - 10.1093/nar/gkg090

DO - 10.1093/nar/gkg090

M3 - Review article

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AN - SCOPUS:0037246686

SN - 0305-1048

VL - 31

SP - 176

EP - 178

JO - Nucleic acids research

JF - Nucleic acids research

IS - 1

ER -

GOBASE – A database of mitochondrial and chloroplast information

Abstract

ASJC Scopus subject areas

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