TY - JOUR
T1 - High-quality genome assembly and annotation of five bacteria isolated from the Abu Dhabi sabkha-shore region
AU - Sarfraz, Beenish
AU - Tuyisabe, Jean
AU - De Montfort, Louis
AU - Ibrahim, Abdulrahman
AU - Abdulkreem Almansoori, Shamma Z.
AU - Alajami, Haya
AU - Almeqbaali, Asma
AU - Kundu, Biduth
AU - Nath, Vishnu Sukumari
AU - Saeed, Esam Eldin
AU - Mishra, Ajay Kumar
AU - Hazzouri, Khaled Michel
AU - Almaskari, Raja
AU - Sharma, Abhishek Kumar
AU - Sudalaimuthuasari, Naganeeswaran
AU - Amiri, Khaled M.A.
N1 - Publisher Copyright:
© The Author(s) 2024.
PY - 2024/12
Y1 - 2024/12
N2 - Objectives: Sabkhas represent polyextreme environments characterized by elevated salinity levels, intense ultraviolet (UV) radiation exposure, and extreme temperature fluctuations. In this study, we present the complete genomes of five bacterial isolates isolated from the sabkha-shore region and investigate their genomic organization and gene annotations. A better understanding of the bacterial genomic organization and genetic adaptations of these bacteria holds promise for engineering microbes with tailored functionalities for diverse industrial and agricultural applications, including bioremediation and promotion of plant growth under salinity stress conditions. Data description: We present a comprehensive genome sequencing and annotation of five bacteria (kcgeb_sa, kcgeb_sc, kcgeb_sd, kcgeb_S4, and kcgeb_S11) obtained from the shores of the Abu Dhabi Sabkha region. Initial bacterial identification was conducted through 16 S rDNA amplification and sequencing. Employing a hybrid genome assembly technique combining Illumina short reads (NovaSeq 6000) and Oxford Nanopore long reads (MinION), we obtained complete annotated high-quality gap-free genome sequences. The genome sizes of the kcgeb_sa, kcgeb_sc, kcgeb_sd, kcgeb_S4, and kcgeb_S11 isolates were determined to be 2.4 Mb, 4.1 Mb, 2.9 Mb, 5.05 Mb, and 4.1 Mb, respectively. Our analysis conclusively assigned the bacterial isolates as Staphylococcus capitis (kcgeb_sa), Bacillus spizizenii (kcgeb_sc and kcgeb_S11), Pelagerythrobacter marensis (kcgeb_sd), and Priestia aryabhattai (kcgeb_S4).
AB - Objectives: Sabkhas represent polyextreme environments characterized by elevated salinity levels, intense ultraviolet (UV) radiation exposure, and extreme temperature fluctuations. In this study, we present the complete genomes of five bacterial isolates isolated from the sabkha-shore region and investigate their genomic organization and gene annotations. A better understanding of the bacterial genomic organization and genetic adaptations of these bacteria holds promise for engineering microbes with tailored functionalities for diverse industrial and agricultural applications, including bioremediation and promotion of plant growth under salinity stress conditions. Data description: We present a comprehensive genome sequencing and annotation of five bacteria (kcgeb_sa, kcgeb_sc, kcgeb_sd, kcgeb_S4, and kcgeb_S11) obtained from the shores of the Abu Dhabi Sabkha region. Initial bacterial identification was conducted through 16 S rDNA amplification and sequencing. Employing a hybrid genome assembly technique combining Illumina short reads (NovaSeq 6000) and Oxford Nanopore long reads (MinION), we obtained complete annotated high-quality gap-free genome sequences. The genome sizes of the kcgeb_sa, kcgeb_sc, kcgeb_sd, kcgeb_S4, and kcgeb_S11 isolates were determined to be 2.4 Mb, 4.1 Mb, 2.9 Mb, 5.05 Mb, and 4.1 Mb, respectively. Our analysis conclusively assigned the bacterial isolates as Staphylococcus capitis (kcgeb_sa), Bacillus spizizenii (kcgeb_sc and kcgeb_S11), Pelagerythrobacter marensis (kcgeb_sd), and Priestia aryabhattai (kcgeb_S4).
KW - Bacillus spizizenii
KW - Illumina
KW - MinION
KW - Pelagerythrobacter marensis
KW - Priestia Aryabhattai
KW - Salt flat
KW - Staphylococcus capitis
UR - http://www.scopus.com/inward/record.url?scp=85196372173&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85196372173&partnerID=8YFLogxK
U2 - 10.1186/s12863-024-01246-6
DO - 10.1186/s12863-024-01246-6
M3 - Article
C2 - 38898391
AN - SCOPUS:85196372173
SN - 2730-6844
VL - 25
JO - BMC Genomic Data
JF - BMC Genomic Data
IS - 1
M1 - 63
ER -