Particle swarm optimization for gene selection in classifying cancer classes

M. S. Mohamad, S. Omatu, S. Deris, M. Yoshioka

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Abstract

The application of microarray data for cancer classification has recently gained in popularity. The main problem that needs to be addressed is the selection of a smaller subset of genes from the thousands of genes in the data that contributes to a disease. This selection process is difficult due to the availability of a small number of samples compared to the huge number of genes, many irrelevant genes, and noisy genes. Therefore, this paper proposes an improved binary particle swarm optimization to select a near-optimal (smaller) subset of informative genes that is relevant for cancer classification. Experimental results show that the performance of the proposed method is superior to the experimental method and other related previous works in terms of classification accuracy and the number of selected genes.

Original languageEnglish
Title of host publicationProceedings of the 14th International Symposium on Artificial Life and Robotics, AROB 14th'09
Pages762-765
Number of pages4
Publication statusPublished - 2009
Externally publishedYes
Event14th International Symposium on Artificial Life and Robotics, AROB 14th'09 - Oita, Japan
Duration: Feb 5 2008Feb 7 2009

Publication series

NameProceedings of the 14th International Symposium on Artificial Life and Robotics, AROB 14th'09

Conference

Conference14th International Symposium on Artificial Life and Robotics, AROB 14th'09
Country/TerritoryJapan
CityOita
Period2/5/082/7/09

Keywords

  • Gene selection
  • Hybrid approach
  • Microarray data
  • Particle swarm optimization

ASJC Scopus subject areas

  • Artificial Intelligence
  • Computer Vision and Pattern Recognition
  • Human-Computer Interaction

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