TY - JOUR
T1 - Prediction of vanillin and glutamate productions in yeast using a hybrid of continuous bees algorithm and flux balance analysis (CBAFBA)
AU - Yin, Leang Huat
AU - Choon, Yee Wen
AU - Mohamad, Mohd Saberi
AU - Chai, Lian En
AU - Chong, Chuii Khim
AU - Abdullah, Afnizanfaizal
AU - Deris, Safaai
AU - Illias, Rosli M.
PY - 2014
Y1 - 2014
N2 - Most food and beverages contain artificial flavor compounds. Creation of artificial flavors is not an easy step and it is hardly ever completely effective. In this paper, we introduce an in silico method in optimization of microbial strains of flavor compound synthesis. Previously, several algorithms exist such as Genetic Algorithm, Evolutionary Algorithm, Opt Knock tool and other related techniques which are widely used to predict the yield of target compound by suggesting the gene knockouts. The use of these algorithms or tools to is able to predict the yield of production instead of using trial and error method for gene deletions. Nowadays, without using in silico method, the direct experiment methods are not cost effective and time consuming. As we know, the cost of chemical is expensive and not all flavorists are able to afford the cost. However, the main limitations of previous algorithms are that they failed to optimize the prediction of the yield and suggesting unrealistic flux distribution. Therefore, this paper proposed a hybrid of continuous Bees algorithm and Flux Balance Analysis. The target compound in this research is vanillin and glutamate compound. The aim of study is to identify optimum gene knockouts. The results in this paper are the prediction of the yield and the growth rate values of the model. The predictive results showed that the improvement in terms of yield may help in food flavorings.
AB - Most food and beverages contain artificial flavor compounds. Creation of artificial flavors is not an easy step and it is hardly ever completely effective. In this paper, we introduce an in silico method in optimization of microbial strains of flavor compound synthesis. Previously, several algorithms exist such as Genetic Algorithm, Evolutionary Algorithm, Opt Knock tool and other related techniques which are widely used to predict the yield of target compound by suggesting the gene knockouts. The use of these algorithms or tools to is able to predict the yield of production instead of using trial and error method for gene deletions. Nowadays, without using in silico method, the direct experiment methods are not cost effective and time consuming. As we know, the cost of chemical is expensive and not all flavorists are able to afford the cost. However, the main limitations of previous algorithms are that they failed to optimize the prediction of the yield and suggesting unrealistic flux distribution. Therefore, this paper proposed a hybrid of continuous Bees algorithm and Flux Balance Analysis. The target compound in this research is vanillin and glutamate compound. The aim of study is to identify optimum gene knockouts. The results in this paper are the prediction of the yield and the growth rate values of the model. The predictive results showed that the improvement in terms of yield may help in food flavorings.
KW - Continuous bees algorithm
KW - Flux balance analysis
KW - Glutamate
KW - Optimization
KW - Vanillin
KW - Yeast
UR - http://www.scopus.com/inward/record.url?scp=84904747397&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84904747397&partnerID=8YFLogxK
U2 - 10.2174/1574893608666131120233937
DO - 10.2174/1574893608666131120233937
M3 - Article
AN - SCOPUS:84904747397
SN - 1574-8936
VL - 9
SP - 284
EP - 294
JO - Current Bioinformatics
JF - Current Bioinformatics
IS - 3
ER -