SubSS: A protein-protein interaction detection tool

Nazar Zaki; Safaai Deris; Saleh Alwahaishi

doi:10.1109/ICIS.2007.175

SubSS: A protein-protein interaction detection tool

Nazar Zaki, Safaai Deris, Saleh Alwahaishi

Department of Computer Science and Software Engineering

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Citation (Scopus)

Abstract

Many essential cellular processes are mediated by protein-protein interaction the reason why predicting protein-protein interaction has recently received considerable attention from biologist around the globe. In this paper, we present a computational tool for detecting protein-protein interaction based on substring similarity measure. Two proteins may interact by the mean of the similarities of the substrings they contain. This friendly and easy to use tool helps biologist to distinguish between high confidence interactions from low confidence or unknown interactions. The tool performance is tested on the currently available protein-protein interaction data for the yeast Saccharomyces cerevisiae, and it delivered considerable improvement over the existing techniques.

Original language	English
Title of host publication	Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007
Pages	999-1004
Number of pages	6
DOIs	https://doi.org/10.1109/ICIS.2007.175
Publication status	Published - 2007
Event	6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007 - Melbourne, VIC, Australia Duration: Jul 11 2007 → Jul 13 2007

Publication series

Name	Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007

Other

Other	6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007
Country/Territory	Australia
City	Melbourne, VIC
Period	7/11/07 → 7/13/07

ASJC Scopus subject areas

General Computer Science
Computer Networks and Communications
Electrical and Electronic Engineering

Access to Document

10.1109/ICIS.2007.175

Cite this

Zaki, N., Deris, S., & Alwahaishi, S. (2007). SubSS: A protein-protein interaction detection tool. In Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007 (pp. 999-1004). Article 4276514 (Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007). https://doi.org/10.1109/ICIS.2007.175

SubSS: A protein-protein interaction detection tool. / Zaki, Nazar; Deris, Safaai; Alwahaishi, Saleh.
Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007. 2007. p. 999-1004 4276514 (Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Zaki, N, Deris, S & Alwahaishi, S 2007, SubSS: A protein-protein interaction detection tool. in Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007., 4276514, Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007, pp. 999-1004, 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007, Melbourne, VIC, Australia, 7/11/07. https://doi.org/10.1109/ICIS.2007.175

Zaki N, Deris S, Alwahaishi S. SubSS: A protein-protein interaction detection tool. In Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007. 2007. p. 999-1004. 4276514. (Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007). doi: 10.1109/ICIS.2007.175

Zaki, Nazar ; Deris, Safaai ; Alwahaishi, Saleh. / SubSS : A protein-protein interaction detection tool. Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007. 2007. pp. 999-1004 (Proceedings - 6th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2007; 1st IEEE/ACIS International Workshop on e-Activity, IWEA 2007).

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SubSS: A protein-protein interaction detection tool

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